PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008397-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 494aa    MW: 55620.2 Da    PI: 5.7644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008397-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13319364454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f+eLr ++P        +++Ka+ L  Av YI++L
  WALNUT_00008397-RA 319 NHVEAERQRRENMNHWFDELRAVVPIV-----SRMDKASLLLDAVSYINEL 364
                         799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-4422211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.298315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17316384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.06E-14318368No hitNo description
PfamPF000102.7E-11319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-15319382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEDLIITPFP VSLPQETPSL TLQQRLQFIL QSQPDRWAYA ILWQTTQNDN GHLLLAWGDG  60
HFQGAHTKDT DPKFSNTSSY PPVNSMLHPE IRKSMRGSTI QPMVGENRQV SDDNHLNADL  120
TDVECFYDMS LTRSFSVGDS MPGKAFAFDS LVWLSGGHEL KFYNCERAKE AQMHGIETFI  180
CIPTSTGVLE MGSPIIIREN RGLVQQAKSL FGRDLPGLVP RQPSPNLVPI QFLDRNISFA  240
DIGITNSIQE EDKYSDQLEK KGVIEAKKAD CINGGQSSYL YSEHVSDSDR PVIFVNMIEK  300
KTPKKKGRKP KLGRDTPLNH VEAERQRREN MNHWFDELRA VVPIVSRMDK ASLLLDAVSY  360
INELKTKIDE LELEFQSKPK EAVKLEHVGT IDNQSSSSST TSVNHITRSN SSEFGLKVEV  420
KIIGLDAMIR VHSENCNYPT AQLMVALRDL EFQVLHASIS CVEELMLQDV VVRVPDGLNT  480
EESLKVALLE KLKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-29212118192Transcription factor MYC3
4rs9_A1e-29212118192Transcription factor MYC3
4rqw_B1e-29212118192Transcription factor MYC3
4rqw_A1e-29212118192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051457.10.0Basic helix-loop-helix DNA-binding family protein
TrEMBLA0A061DS370.0A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.16e-60NACL-inducible gene 1